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Image Search Results
Journal: Experimental cell research
Article Title: The CNS microenvironment promotes leukemia cell survival by disrupting tumor suppression and cell cycle regulation in pediatric T-cell acute lymphoblastic leukemia.
doi: 10.1016/j.yexcr.2024.114015
Figure Lengend Snippet: Fig. 3. The role of SETD2 in tumor suppression and apoptosis. A) RNA-sequencing analysis of normalized FPKM values (TARGET) showing decreased expression of SETD2 in CNS3 diagnosis patients compared to CNS1 diagnosis samples. (Significance calculated by one-way ANOVA comparing the mean of all groups to the mean of the control group (CNS1), displayed as adjusted p-value. *p < 0.05). B) RNA-sequencing correlation analysis of SETD2 and TP53 (FPKM) showing a negative correlation (r = −0.694, **p=<0.01) and MDM2 showing a positive correlation (r = 0.623, *p=<0.05) in CNS relapsed T-ALL patients (TARGET). (Correlation was calculated using Pearson correlation coefficients, two-tailed with 95% confidence interval). C) String diagram showing protein-protein interactions directly and indirectly experimentally linking SETD2 with TP53, MDM2, BCLX, BCL2, NANOG, SOX2, OCT4, SIRT1 and EP300. D) mRNA expression levels (fold change versus empty vector control) of MDM2, TP53, MYCC, SOX2, NANOG, and OCT4 24 h after SETD2 overexpression by transfection in MOLT16 cells. E) mRNA expression levels (displayed as normalized fold change) of SETD2 overexpression in T-ALL cell lines MOLT16, SUP-T1, CCL-119 has a negative correlation with TP53 (r = −0.709, p = ns), and a positive correlation with SOX2 (r = 0.881, p = ns), NANOG (r = 0.844, p = ns) and OCT4 (r = 0.896, p = ns). (Correlation was calculated using Pearson correlation coefficients, two-tailed with 95% confidence interval). F) Expression levels of BCL2 and BCLX isoforms after SETD2 overexpression in T- ALL cell lines (MOLT16, SUP-T1 and CCL-119) normalized to empty vector control (Significance calculated by multiple two-tailed, unpaired Student’s t-test with Holm-ˇSíd´ak correction for multiple comparisons, displayed as adjusted p-value, *p < 0.05 **p < 0.01).
Article Snippet: T-ALL
Techniques: RNA Sequencing, Expressing, Biomarker Discovery, Control, Two Tailed Test, Protein-Protein interactions, Plasmid Preparation, Over Expression, Transfection